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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015914344.1_cds_XP_016464347.1_57395
CDS Infomation

[gene=LOC107787313] [db_xref=GeneID:107787313] [protein=prolycopene isomerase 1, chloroplastic-like] [protein_id=XP_016464347.1] [location=join(205629..205764,206656..206879,208247..208357,208494..208547,208747..209034,209964..210155,210263..210421,210743..210979,211364..211505,211670..211842)] [gbkey=CDS]
Sequence

ATGGCGTTGAGATTTCATCCTTTTTCTCCCCTTTTCAACTTCCGCTCCACTAAACGAAGT
CGCACAGTTTTGGCGCGCAACGAAGTCTCTGCCACTTCTAACGGCTATCCTTCTTCCACT
CTTACCTCCAAGCAAGGCAAGCCAGAAGCAGATATCATTGTTATTGGGAGCGGTATAGGT
GGGCTATGTTGTGGTGGACTTCTTGCTAGGTATGGCCAAGATGTTTTAGTACTCGAAAGC
CATGATGTAGCTGGGGGTGCAGCTCACTCTTTTGATATTAAAGGGTACAAATTTGACTCT
GGTCCATCATTGTTCTCCGGTTTTCAATCAAGAGGTCCTCAGGCAAATCCATTAGCACAG
GTTCTTGATGCATTAGGTGAATCAATTCCCTGTGCAAATTATGACTCATGGATGGTATAT
GTACCTGAAGGTGAATTCTTGTCACGCATTGGCCCAACGGATTTTTTCAAGGATCTGGAG
AAGTATGCAGGACCAGATTCAGCGAGAGAGTGGAGGAAACTTCTCGACGCAATACTTCCA
ATCTCAGCAGCTGCAATGGCTCTACCTCCTTTATCTATCCGAGGTGATTTGGGTGTTATT
TCGACTGCTGCTGCTAGATATGCACCTTCTCTCTTAAAAACTTTTGCTCAAATGGGACCT
CAAGGAGCCCTTGGTGCTACCAAGCTTCTCAGACCCTTTTCGGAAATCATTGATTCTTTG
GGAATAAAAGACCCTTTTATACGAAATTGGCTAGATCTCCTAGCCTTCTTGCTTGCCGGG
GTCAAAACTAACGGCATACTCTCAGCAGAAATGGTGTACATGTTTTCAGAATGGTATAAG
CCGGGTTGCACTCTAGAATATCCACTTCAAGGAAGTGGAGCAATTGTTGATGCTCTTGTT
CGAGGGCTACAAAAATTTGGTGGGAGGATTTCTCTCAAGAGTCACGTAGAAAATATAGTT
GTTGAAAATGGTCGAGCTGTTGGAGTCAAACTAAGAGGTGGCCAATTTGTCCGTGCCAAG
AAGGCTGTAGTCAGCAATGCATCTATGTGGGATACCTTGAGCTTATTGCCTCCAGAAGTT
GTCCCAAAATCATACCGAGACAACATCAAATCGACCCCACAGTGTGAATCGTTCATGCAT
CTGCATTTGGGTTTTGATGCAGAGGGTATACGTGATGACCTGGGAATCCATCATATAGTA
GTAAATGACTGGGACAGAGGGGTTGATGCTGATCAGAATGTCATACTGATATCCGTGCCC
AGTGTGCTCAGTCCAAATCTTGCTCCACCCGGAAAGCATATTTTGCATGCCTATACCCCT
GGAACTGAGCCATTTGAAATTTGGGAAGGTCTTGATCGCCGAAGCAATGAGTACAAAAAC
CTCAAGGCTGAAAGATCTGAGGTAATGTGGAGGGCTGTGGAGAAAGCACTTGGGCCAGGG
TTTAATCGCGAGAAGTGTGAGGTGAAATTAGTTGGAACTCCATTAACACATAAAAGATTT
CTTAGAAGAAACAGAGGGACTTATGGGCCAGCTATATTAGCAGGTAAAGGCACATTTCCT
GGACATTCCACACCAATTCCACAACTCTTGTGCTGTGGAGACTCTACTTTTCCTGGCATT
GGAGTGCCTGCAGTTGCTGCTAGTGGTGCCATTGTTGCGAATTCGCTGGTTTCTGTGGCA
GAACATTCACAGCTTCTTGATGCTGTAGGGATATGA

Peptide Sequence

PEP ID

XP_016464347.1
PEP Infomation

PREDICTED: prolycopene isomerase 1, chloroplastic-like [Nicotiana tabacum]
Sequence

MALRFHPFSPLFNFRSTKRSRTVLARNEVSATSNGYPSSTLTSKQGKPEADIIVIGSGIG
GLCCGGLLARYGQDVLVLESHDVAGGAAHSFDIKGYKFDSGPSLFSGFQSRGPQANPLAQ
VLDALGESIPCANYDSWMVYVPEGEFLSRIGPTDFFKDLEKYAGPDSAREWRKLLDAILP
ISAAAMALPPLSIRGDLGVISTAAARYAPSLLKTFAQMGPQGALGATKLLRPFSEIIDSL
GIKDPFIRNWLDLLAFLLAGVKTNGILSAEMVYMFSEWYKPGCTLEYPLQGSGAIVDALV
RGLQKFGGRISLKSHVENIVVENGRAVGVKLRGGQFVRAKKAVVSNASMWDTLSLLPPEV
VPKSYRDNIKSTPQCESFMHLHLGFDAEGIRDDLGIHHIVVNDWDRGVDADQNVILISVP
SVLSPNLAPPGKHILHAYTPGTEPFEIWEGLDRRSNEYKNLKAERSEVMWRAVEKALGPG
FNREKCEVKLVGTPLTHKRFLRRNRGTYGPAILAGKGTFPGHSTPIPQLLCCGDSTFPGI
GVPAVAASGAIVANSLVSVAEHSQLLDAVGI

Transcript Sequence

Gene sequence data has not been registered.